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A
AminoAcidWordEmbedding (class in deepnog.models.deepnog)
C
collate_sequences() (in module deepnog.data.dataset)
count_parameters() (in module deepnog.utils.network)
create_df() (in module deepnog.utils.io_utils)
D
DataSplit (class in deepnog.data.split)
DeepFam (class in deepnog.models.deepfam)
DeepFamAblation1 (class in deepnog.models.deepfam)
DeepFamAblation12 (class in deepnog.models.deepfam)
DeepFamAblation123 (class in deepnog.models.deepfam)
DeepFamAblation13 (class in deepnog.models.deepfam)
DeepFamAblation2 (class in deepnog.models.deepfam)
DeepFamAblation23 (class in deepnog.models.deepfam)
DeepFamAblation3 (class in deepnog.models.deepfam)
deepnog
module
DeepNOG (class in deepnog.models.deepnog)
deepnog.client.client
module
deepnog.data.dataset
module
deepnog.data.split
module
deepnog.learning.inference
module
deepnog.learning.training
module
deepnog.models.deepfam
module
deepnog.models.deepnog
module
deepnog.tests
module
deepnog.tests.utils
module
deepnog.utils.bio
module
deepnog.utils.config
module
deepnog.utils.io_utils
module
deepnog.utils.logger
module
deepnog.utils.metrics
module
deepnog.utils.network
module
deepnog.utils.sync
module
E
estimate_performance() (in module deepnog.utils.metrics)
F
fit() (in module deepnog.learning.training)
forward() (deepnog.models.deepfam.DeepFam method)
(deepnog.models.deepfam.DeepFamAblation1 method)
(deepnog.models.deepfam.DeepFamAblation12 method)
(deepnog.models.deepfam.DeepFamAblation123 method)
(deepnog.models.deepfam.DeepFamAblation13 method)
(deepnog.models.deepfam.DeepFamAblation2 method)
(deepnog.models.deepfam.DeepFamAblation23 method)
(deepnog.models.deepfam.DeepFamAblation3 method)
(deepnog.models.deepnog.AminoAcidWordEmbedding method)
(deepnog.models.deepnog.DeepNOG method)
G
gen_amino_acid_vocab() (in module deepnog.data.dataset)
get_config() (in module deepnog.utils.config)
get_data_home() (in module deepnog.utils.io_utils)
get_deepnog_root() (in module deepnog.tests.utils)
get_logger() (in module deepnog.utils.logger)
get_weights_path() (in module deepnog.utils.io_utils)
group_train_val_test_split() (in module deepnog.data.split)
I
increment() (deepnog.utils.sync.SynchronizedCounter method)
increment_and_get_value() (deepnog.utils.sync.SynchronizedCounter method)
L
load_nn() (in module deepnog.utils.network)
M
main() (in module deepnog.client.client)
module
deepnog
deepnog.client.client
deepnog.data.dataset
deepnog.data.split
deepnog.learning.inference
deepnog.learning.training
deepnog.models.deepfam
deepnog.models.deepnog
deepnog.tests
deepnog.tests.utils
deepnog.utils.bio
deepnog.utils.config
deepnog.utils.io_utils
deepnog.utils.logger
deepnog.utils.metrics
deepnog.utils.network
deepnog.utils.sync
P
parse() (in module deepnog.utils.bio)
predict() (in module deepnog.learning.inference)
ProteinDataset (class in deepnog.data.dataset)
ProteinIterableDataset (class in deepnog.data.dataset)
ProteinIterator (class in deepnog.data.dataset)
S
set_device() (in module deepnog.utils.network)
ShuffledProteinIterableDataset (class in deepnog.data.dataset)
SynchronizedCounter (class in deepnog.utils.sync)
T
train_val_test_split() (in module deepnog.data.split)
U
uniref_test (deepnog.data.split.DataSplit attribute)
uniref_train (deepnog.data.split.DataSplit attribute)
uniref_val (deepnog.data.split.DataSplit attribute)
V
value (deepnog.utils.sync.SynchronizedCounter property)
X
X_test (deepnog.data.split.DataSplit attribute)
X_train (deepnog.data.split.DataSplit attribute)
X_val (deepnog.data.split.DataSplit attribute)
Y
y_test (deepnog.data.split.DataSplit attribute)
y_train (deepnog.data.split.DataSplit attribute)
y_val (deepnog.data.split.DataSplit attribute)
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