deepnog.client package¶

deepnog.client.client module¶

Authors¶

Roman Feldbauer
Lukas Gosch

Date¶

2019-10-18

Usage¶

python client.py –help

Description¶

Provides the deepnog command line client and entry point for users.

DeepNOG predicts protein families/orthologous groups of given protein sequences with deep learning.

Since version 1.2, model training is available as well.

File formats supported: Preferred: FASTA DeepNOG supports protein sequences stored in all file formats listed in https://biopython.org/wiki/SeqIO but is tested for the FASTA-file format only.

Architectures supported:

Databases supported:

eggNOG 5.0, taxonomic level 1 (root)
eggNOG 5.0, taxonomic level 2 (bacteria)
Additional databases will be trained on demand/users can add custom databases using the training facilities.

deepnog.client.client.main()[source]¶: DeepNOG command line tool.