API Documentation

This is the API documentation for deepnog.

DeepNOG

DeepNOG is a deep learning based command line tool to infer orthologous groups of given protein sequences. It provides a number of models for eggNOG orthologous groups, and allows to train additional models for eggNOG or other databases.

Modules in subpackages

• client
  • deepnog.client.client module
    • Authors
    • Date
    • Usage
    • Description
• data
  • deepnog.data.dataset module
  • deepnog.data.split module
• learning
  • deepnog.learning.inference module
  • deepnog.learning.training module
• models
  • deepnog.models.deepencoding module
  • deepnog.models.deepfam module
  • deepnog.models.deepnog module
• tests
  • deepnog.tests.utils module
  • Module contents
• utils
  • deepnog.utils.bio module
  • deepnog.utils.config module
  • deepnog.utils.io_utils module
  • deepnog.utils.logger module
  • deepnog.utils.metrics module
  • deepnog.utils.network module
  • deepnog.utils.sync module