User Guide

Contents:

• Core Concepts
  • deepnog infer for orthology assignments
  • deepnog train for creating custom models
• CLI Documentation
  • Basic Commands
  • Advanced Commands
• API Documentation
  • DeepNOG
  • client
  • data
  • learning
  • models
  • tests
  • utils
• Supported databases
  • eggNOG 5
  • COG 2020
• New models/architectures
  • Training scripts
  • Register new models
  • Register new network architectures
• File formats
  • Protein sequences
  • Protein orthologous group labels
  • Assignment output