deepnog.client

Author: Lukas Gosch

Date: 2019-10-18

Usage: python client.py –help

Description:

Provides the deepnog command line client and entry point for users.

DeepNOG predicts protein families/orthologous groups of given protein sequences with deep learning.

File formats supported: Preferred: FASTA DeepNOG supports protein sequences stored in all file formats listed in https://biopython.org/wiki/SeqIO but is tested for the FASTA-file format only.

Architectures supported:

Databases supported:

  • eggNOG 5.0, taxonomic level 1 (root)

  • eggNOG 5.0, taxonomic level 2 (bacteria)

deepnog.client.get_parser()[source]

Creates a new argument parser.

Returns

parser – ArgumentParser object to parse program arguments.

Return type

ArgumentParser

deepnog.client.main()[source]

DeepNOG command line tool.

deepnog.client.start_prediction(args)[source]