Installation¶
Installation from PyPI¶
The current release of deepnog can be installed from PyPI:
pip install deepnog
For typical use cases, and quick start, this is sufficient.
Dependencies and model files¶
All package dependencies of deepnog are automatically installed
by pip. We also require model files (networks parameters/weights),
which are too large for GitHub/PyPI. These are hosted on separate servers,
and downloaded automatically by deepnog, when required. By default,
models are cached in $HOME/deepnog_data/.
You can change this path by setting the DEEPNOG_DATA environment variable.
DEEPNOG_DATA="/custom/path/models" deepnog sequences.fa
Installation from source¶
You can always grab the latest version of deepnog directly from GitHub:
cd install_dir
git clone git@github.com:VarIr/deepnog.git
cd deepnog
pip install -e .
This is the recommended approach, if you want to contribute
to the development of deepnog.