deepnog.client package¶
deepnog.client.client module¶
Authors¶
Roman Feldbauer
Lukas Gosch
Date¶
2019-10-18
Usage¶
python client.py –help
Description¶
Provides the deepnog
command line client and entry point for users.
DeepNOG predicts protein families/orthologous groups of given protein sequences with deep learning.
Since version 1.2, model training is available as well.
File formats supported: Preferred: FASTA DeepNOG supports protein sequences stored in all file formats listed in https://biopython.org/wiki/SeqIO but is tested for the FASTA-file format only.
Architectures supported:
- Databases supported:
eggNOG 5.0, taxonomic level 1 (root)
eggNOG 5.0, taxonomic level 2 (bacteria)
Additional databases will be trained on demand/users can add custom databases using the training facilities.